The 5D's focusing screen is meant to be user-replaceable. I swapped mine for the super-precision matte the week I got the Mark II.
It's just a little hinged door. You probably accidentally depressed the switch that holds it in place. If you scratched up the old one,
a new focus screen only costs about $40, and comes with a tweezer-like tool so you can avoid touching the focus screen surface. It should take about five seconds. The 5Dii can take three different focus screens: the Eg-A (standard matte), Eg-S (super-precision, made for faster lenses and thinner DoF, it's darker), and the Eg-D (has a grid on it). The 5D classic's screens are named Ee instead of Eg. The 5Dii's have extra tabs you can grind off and use in the classic if you can't find the Ee ones.
This Youtube video demonstrates how the focus screen is replaced.